species:   Clros
pid:       PID2251
parent:    cro-mir-46
paralog:   
locus:     CADEHS020000002.2:2828841-2828933
matures:   ['AUUCCCCGUAUCGGAGA', 'AGGCUGGCGAGGCGAAUC']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000002.2:2828841-2828933

1672 out of bounds
227 alignments
226 proper strand
191 stranded perfect matches

 **************                                                             **************   
AUUCCCCGUAUCGGAGAUUGUGUAUGAAACAUUCUUUUUGGUCACUUUUUGAAGAUGAGCGUGCAUGCAUAAUGAGGCUGGCGAGGCGAAUCC
(((((((((..(((..((((((((((..((.(((.((((.(........).)))).))).)).))))))))))....)))))).)).))))..
AUUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=17 a=26 c
--------------------------------------------------------------------------AGGCUGGCGAGGCGAAUC- l=18 a=0 c*
---CCCCGUAUCGGA------------------------------------------------------------------------------ l=12 a=59 ma
------------------------------------------------------------------------------UGGCGAGGCGAA--- l=12 a=0 ma*

AUUCCCCGUAUCG-------------------------------------------------------------------------------- l=13 a=1 
AUUCCCCGUAUCGG------------------------------------------------------------------------------- l=14 a=1 
AUUCCCCGUAUCGGA------------------------------------------------------------------------------ l=15 a=41 
AUUCCCCGUAUCGGg------------------------------------------------------------------------------ l=15 a=1 
AUUCCCCGUAUCGGAG----------------------------------------------------------------------------- l=16 a=9 
AUUCCCCGUAUCGGAa----------------------------------------------------------------------------- l=16 a=1 
AUUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=17 a=26 (c)
AUUCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=17 a=22 
AUUCCCCGUAUCGGgGA---------------------------------------------------------------------------- l=17 a=1 
-UUCCCCGUAUCGG------------------------------------------------------------------------------- l=13 a=1 
-UUCCCCGUAUCGGA------------------------------------------------------------------------------ l=14 a=2 
-UUCCCCGUAUCGGg------------------------------------------------------------------------------ l=14 a=1 
-UUCCCCGUAUCGGAG----------------------------------------------------------------------------- l=15 a=1 
-UUCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=16 a=4 
--UCCCCGUAUCGGA------------------------------------------------------------------------------ l=13 a=21 
--UCCCCGUAUCGGAG----------------------------------------------------------------------------- l=14 a=2 
---CCCCGUAUCGG------------------------------------------------------------------------------- l=11 a=1 
---CCCCGUAUCGGA------------------------------------------------------------------------------ l=12 a=59 (ma)
---CCCCGUAUCGGAG----------------------------------------------------------------------------- l=13 a=12 
---CCCCGUAUCGGAGc---------------------------------------------------------------------------- l=14 a=5 
---CCCCGUAUCGGAGA---------------------------------------------------------------------------- l=14 a=1 
---CCCCGUAUCGGAGAUUGUGUAUGAAACAUUCUUU-------------------------------------------------------- l=34 a=1 
----CCCGUAUCGGA------------------------------------------------------------------------------ l=11 a=9 
----------UCGGAGAUUGUGUAUGAAACA-------------------------------------------------------------- l=21 a=1 
----------UCGGAGAUUGUGUAUGAAACAUUCUUUUU------------------------------------------------------ l=29 a=1 
-----------------UUGUGUAUGAAACAUUCUUUU------------------------------------------------------- l=21 a=1 

mb-01011
ax-1011001
ku-01
ss-101011111100
fn-111
